Objective: To explore the effect of the herbal decoction Qingyi Huaji formula (QYHJ) combined with gemcitabine on apoptosis and expression of Bcl-2 protein of human pancreatic cancer SW1990 in vivo. Methods: Tumor-burdened nude mice were randomized into control group, Chemo group, groups of Chemo plus QYHJ at different doses. After treatment, inhibiting rates of tumor growth were calculated. Cell apoptosis of each group was extracted by flow cytometry(FCM). Expression of Bcl-2 protein was learned by method of immunohistochemistry. Result: Tumor weight in the Chemo plus QYHJ groups at different doses was significantly lower than that in the Chemo group (P<0.05). Compared to the Chemo group, cell apoptosis rate in the Chemo plus QYHJ groups at middle dose was higher (P<0.05), while the expression of Bcl-2 was lower (P<0.05). Conclusion: QYHJ formula may have synergtic action on Gemcitabine, to inhibit the proliferation of human pancreatic cancer SW1990 in vivo, possibly by inhibiting expression of Bcl-2 protein and inducing cell apoptosis.